Basic Information
Locus ID:
BniB03g012000.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 5000476 | 5001681 | - | BniB03g012000.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 35,890.35 Da | 40.66 | 65.70 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 171 | 299 | 4.24356E-66 | - |
| CDD | cd16571 | RING-HC_SIAHs | 55 | 93 | 1.33941E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 99 | 298 | 3.1E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 110 | 301 | 3.99E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 97 | 4.42E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 298 | 9.3E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 109 | 4.7E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | 9.5E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 110 | 170 | 14.091654 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 57 | 93 | 8.933805 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_013708343.2 | E3 ubiquitin-protein ligase SINAT4 isoform X2 [Brassica napus] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VXM3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012544 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology