Basic Information
Locus ID:
BniB03g011930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4959797 | 4964206 | + | BniB03g011930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 72,209.40 Da | 33.24 | 94.79 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09323 | TDT_SLAC1_like | 141 | 444 | 2.07353E-107 | - |
| CDD | cd00195 | UBCc | 496 | 635 | 2.14321E-70 | IPR000608 |
| Pfam | PF03595 | Voltage-dependent anion channel | 142 | 445 | 3.1E-50 | IPR004695 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 498 | 634 | 4.0E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 485 | 640 | 1.75E-65 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 487 | 641 | 1.2E-73 | IPR016135 |
| Gene3D | G3DSA:1.50.10.150 | - | 138 | 455 | 1.4E-71 | IPR038665 |
| SMART | SM00212 | ubc_7 | 497 | 640 | 2.9E-78 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 494 | 640 | 60.653061 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 567 | 582 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27970.1 | SLAC1 homologue 2. Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane. | 0 |
| RefSeq | XP_018450624.1 | PREDICTED: S-type anion channel SLAH2 isoform X1 [Raphanus sativus] | 0 |
| Q9ASQ7 | S-type anion channel SLAH2 OS=Arabidopsis thaliana OX=3702 GN=SLAH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6BS60 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA08T33986Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology