Basic Information
Locus ID:
BniB03g011910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4955946 | 4957157 | - | BniB03g011910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 36,014.75 Da | 45.09 | 81.83 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 64 | 197 | 6.30969E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 66 | 196 | 2.8E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 218 | 254 | 7.9E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 26 | 262 | 1.69E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 25 | 197 | 1.4E-93 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 198 | 270 | 1.4E-93 | - |
| SMART | SM00382 | AAA_5 | 62 | 199 | 1.6E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 169 | 188 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 285 | - | - |
| Coils | Coil | Coil | 254 | 285 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018485212.1 | PREDICTED: ribosome biogenesis ATPase RIX7-like isoform X3 [Raphanus sativus] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | Q84JG4 | AAA domain-containing protein (Fragment) OS=Arabidopsis thaliana OX=3702 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology