Basic Information
Locus ID:
BniB03g011780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
lectin protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4899860 | 4901917 | - | BniB03g011780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 76,270.85 Da | 37.04 | 88.82 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 356 | 622 | 4.86913E-96 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 24 | 254 | 1.34347E-79 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 351 | 618 | 9.0E-46 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 24 | 262 | 2.0E-59 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 328 | 620 | 7.65E-75 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 23 | 263 | 7.0E-61 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 22 | 270 | 3.4E-60 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 429 | 642 | 7.2E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 312 | 428 | 8.0E-25 | - |
| SMART | SM00220 | serkin_6 | 350 | 625 | 8.8E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 350 | 625 | 37.742741 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 472 | 484 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 356 | 377 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28350.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_018447227.1 | PREDICTED: probable L-type lectin-domain containing receptor kinase VII.2 [Raphanus sativus] | 0 |
| O49445 | Probable L-type lectin-domain containing receptor kinase VII.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK72 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8X7VXM1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012567 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20289, jg24884 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019880, pistato.v30072810 |
| Apiaceae | Apium graveolens | 1 | Ag8G00910 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720175 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G10401, FtriNA13643 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G04960.1, AT4G28350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027026m.g.v1.0, Thhalv10028484m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g03990.v2.2, Sp7g26300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011780.2N, BniB08g047280.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2262, Ceq02G2626 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2548, Cgl02G2719 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g03060, gene.Cymno12g03070 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07480 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005630 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g05560, gene.Posoc09g05580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.846 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23763 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1953 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21581 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.60 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20941 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21924 |
| Salicaceae | Populus euphratica | 4 | populus_peu10060, populus_peu18170, populus_peu18171 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622280, gene-LOC132638654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003823000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009306 |