Basic Information
Locus ID:
BniB03g011570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4793746 | 4794990 | + | BniB03g011570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 47,577.44 Da | 67.08 | 71.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 121 | 164 | 2.86561E-20 | - |
| Pfam | PF13639 | Ring finger domain | 121 | 164 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 169 | 2.21E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 182 | 1.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 163 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 164 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 348 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018449639.1 | PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Raphanus sativus] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B0H5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012587 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology