Basic Information
Locus ID:
BniB03g010290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4185259 | 4186776 | + | BniB03g010290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.64 | 30,973.74 Da | 42.95 | 68.94 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 24 | 151 | 1.1E-56 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 156 | 257 | 1.9E-37 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 24 | 151 | 4.8E-81 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 24 | 273 | 3.1E-119 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 75 | 86 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 258 | - | - |
| Coils | Coil | Coil | 212 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31700.1 | ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_018460924.1 | PREDICTED: 40S ribosomal protein S6-1 [Raphanus sativus] | 0 |
| O48549 | Small ribosomal subunit protein eS6z OS=Arabidopsis thaliana OX=3702 GN=RPS6A PE=1 SV=2 | 0 | |
| TrEMBL | A0A817ABK3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A08P18530.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology