Basic Information
Locus ID:
BniB03g010160.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 4116611 | 4125598 | + | BniB03g010160.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 131,289.31 Da | 30.49 | 93.81 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 569 | 692 | 4.92775E-32 | IPR002083 |
| CDD | cd00121 | MATH | 272 | 398 | 6.79979E-30 | IPR002083 |
| CDD | cd00121 | MATH | 892 | 1013 | 2.64983E-27 | IPR002083 |
| CDD | cd00121 | MATH | 8 | 128 | 4.49817E-31 | IPR002083 |
| Pfam | PF00917 | MATH domain | 574 | 692 | 5.0E-10 | IPR002083 |
| Pfam | PF00917 | MATH domain | 277 | 398 | 2.2E-10 | IPR002083 |
| Pfam | PF00917 | MATH domain | 897 | 1011 | 0.0046 | IPR002083 |
| Pfam | PF00917 | MATH domain | 13 | 127 | 1.2E-9 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 137 | 6.05E-31 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 889 | 1020 | 1.8E-29 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 568 | 701 | 6.38E-33 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 269 | 408 | 5.07E-33 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 883 | 1019 | 4.1E-29 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 558 | 698 | 6.9E-34 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 257 | 404 | 8.4E-34 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 2 | 134 | 2.1E-32 | IPR008974 |
| SMART | SM00061 | math_3 | 892 | 998 | 5.8E-7 | IPR002083 |
| SMART | SM00061 | math_3 | 569 | 680 | 1.4E-13 | IPR002083 |
| SMART | SM00061 | math_3 | 272 | 380 | 3.6E-15 | IPR002083 |
| SMART | SM00061 | math_3 | 8 | 116 | 1.7E-11 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 567 | 691 | 25.14687 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 270 | 397 | 26.962303 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 890 | 1012 | 22.768906 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 6 | 127 | 24.124088 | IPR002083 |
| Coils | Coil | Coil | 511 | 531 | - | - |
| Coils | Coil | Coil | 798 | 832 | - | - |
| Coils | Coil | Coil | 234 | 268 | - | - |
| Coils | Coil | Coil | 1119 | 1146 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27040.1 | Meprin and TRAF (MATH) homology domain-containing protein. | 0 |
| RefSeq | XP_018450158.1 | PREDICTED: MATH domain and coiled-coil domain-containing protein At3g27040-like [Raphanus sativus] | 0 |
| Q9LSD2 | MATH domain and coiled-coil domain-containing protein At3g27040 OS=Arabidopsis thaliana OX=3702 GN=At3g27040 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8T2AVZ7 | TRAF-like OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa03g029690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |