Basic Information
Locus ID:
BniB03g009560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 3793940 | 3797467 | + | BniB03g009560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 76,405.88 Da | 47.75 | 79.53 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 157 | 426 | 3.41573E-44 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 173 | 231 | 1.9E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 426 | 0.0074 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 341 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 290 | 4.6E-7 | IPR001680 |
| Pfam | PF10075 | CSN8/PSMD8/EIF3K family | 521 | 651 | 6.4E-19 | IPR033464 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 140 | 428 | 7.85E-61 | IPR011047 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 591 | 680 | 8.43E-17 | IPR036390 |
| SUPERFAMILY | SSF48371 | ARM repeat | 463 | 589 | 7.48E-43 | IPR016024 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 429 | 4.9E-126 | IPR015943 |
| Gene3D | G3DSA:1.25.40.250 | ARM repeat; domain 1 | 463 | 579 | 2.2E-41 | IPR016020 |
| Gene3D | G3DSA:1.10.10.10 | - | 582 | 681 | 3.2E-18 | IPR036388 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 0.0086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 341 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 247 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 6.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 299 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 350 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 427 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 258 | 290 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 8.65015 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
| Hamap | MF_03010 | Eukaryotic translation initiation factor 3 subunit K [EIF3K]. | 462 | 683 | 24.492813 | IPR009374 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 465 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_018462037.1 | PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Raphanus sativus] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | M4D4M6 | Eukaryotic translation initiation factor 3 subunit K OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology