Basic Information
Locus ID:
BniB03g009140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 3616124 | 3618157 | - | BniB03g009140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 37,628.42 Da | 68.99 | 48.63 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 245 | 327 | 1.81532E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 247 | 315 | 5.9E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 221 | 341 | 9.6E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 332 | 2.5E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 246 | 324 | 1.8E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 245 | 331 | 12.577391 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_018462735.1 | PREDICTED: nuclear speckle RNA-binding protein A-like [Raphanus sativus] | 0 |
| F4HWF9 | Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VXS2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012819 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology