Basic Information
Locus ID:
BniB03g009110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 3609271 | 3610693 | - | BniB03g009110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 35,525.94 Da | 73.67 | 51.48 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05678 | VQ motif | 59 | 80 | 9.6E-5 | IPR008889 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 216 | 310 | 6.17E-7 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 270 | 318 | 5.5E-6 | IPR012677 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.1 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_018462736.1 | PREDICTED: nuclear speckle RNA-binding protein A-like [Raphanus sativus] | 0 |
| F4HWF9 | Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VWU2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology