Basic Information
Locus ID:
BniB03g008330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 3270702 | 3273135 | - | BniB03g008330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 60,288.17 Da | 28.06 | 70.63 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 18 | 148 | 1.52832E-48 | IPR033734 |
| CDD | cd09612 | Jacalin | 220 | 346 | 4.66088E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 404 | 535 | 1.00315E-37 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 219 | 348 | 1.8E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 149 | 1.1E-37 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 403 | 535 | 3.8E-31 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 209 | 348 | 3.4E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 390 | 534 | 4.32E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 5 | 149 | 8.24E-46 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 194 | 346 | 1.4E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 383 | 535 | 4.9E-50 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 1.3E-55 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 2.6E-46 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 403 | 536 | 7.1E-44 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 217 | 348 | 1.8E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 57.295471 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 392 | 536 | 50.701897 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 206 | 348 | 49.079292 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_018447309.1 | PREDICTED: jacalin-related lectin 3-like [Raphanus sativus] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B2U9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_012901 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology