Basic Information
Locus ID:
BniB03g007400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2911240 | 2914653 | - | BniB03g007400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 80,333.84 Da | 46.30 | 76.15 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 7.08307E-29 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 144 | 9.3E-10 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 417 | 8.4E-12 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 4.3E-107 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 358 | 483 | 3.34E-35 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 3.66E-61 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 11 | 205 | 1.53E-50 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 3.2E-155 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 473 | 1.3E-26 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 3.2E-155 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 636 | 1.8E-227 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 552 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_009110370.1 | nuclear poly(A) polymerase 1 [Brassica rapa] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6C236 | Poly(A) polymerase OS=Brassica campestris OX=3711 GN=BRAA08T34991Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology