Basic Information
Locus ID:
BniB03g006760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains UspA (InterPro IPR006016), Serine threonine-protein kinase domain (InterPro IPR002290), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine-protein kinase, active site (InterPro IPR008271), Protein kinase-like domain (InterPro IPR011009), Rossmann-like alpha beta alpha sandwich fold (InterPro IPR014729), Protein kinase, catalytic domain (InterPro IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro IPR020635)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2659051 | 2662777 | + | BniB03g006760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 85,241.35 Da | 55.68 | 75.96 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 154 | 6.55389E-56 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 145 | 2.2E-9 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 452 | 703 | 1.9E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 428 | 703 | 1.91E-65 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 154 | 1.34E-8 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 410 | 521 | 3.6E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 154 | 9.1E-10 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 522 | 728 | 3.0E-47 | - |
| SMART | SM00220 | serkin_6 | 449 | 711 | 2.9E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 449 | 711 | 35.622639 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 567 | 579 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 284 | - | - |
| Coils | Coil | Coil | 321 | 341 | - | - |
| Coils | Coil | Coil | 390 | 423 | - | - |
| Coils | Coil | Coil | 347 | 379 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16760.2 | - | 0 |
| RefSeq | XP_009110442.1 | U-box domain-containing protein 35 [Brassica rapa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VXA2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013031 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology