Basic Information
Locus ID:
BniB03g006560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2588896 | 2593273 | + | BniB03g006560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 115,957.89 Da | 55.14 | 64.77 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 757 | 801 | 0.00796273 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 754 | 797 | 7.45E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 747 | 805 | 2.1E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 1050 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 960 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15940.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_013603180.1 | PREDICTED: trichohyalin-like isoform X2 [Brassica oleracea var. oleracea] | 0 |
| Q9S9P0 | Sister chromatid cohesion protein PDS5 homolog E OS=Arabidopsis thaliana OX=3702 GN=PDS5E PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B311 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology