Basic Information
Locus ID:
BniB03g006090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
splicing factor 3A subunit 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2424069 | 2426493 | + | BniB03g006090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 86,580.02 Da | 56.44 | 71.41 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01800 | Ubl_SF3a120 | 698 | 773 | 7.44927E-27 | IPR035563 |
| Pfam | PF12230 | Pre-mRNA splicing factor PRP21 like protein | 258 | 470 | 1.0E-56 | IPR022030 |
| Pfam | PF01805 | Surp module | 68 | 119 | 2.7E-17 | IPR000061 |
| Pfam | PF01805 | Surp module | 188 | 239 | 1.3E-16 | IPR000061 |
| Pfam | PF00240 | Ubiquitin family | 705 | 775 | 1.4E-9 | IPR000626 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 163 | 239 | 3.4E-19 | IPR035967 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 678 | 778 | 5.3E-24 | IPR029071 |
| SUPERFAMILY | SSF109905 | Surp module (SWAP domain) | 48 | 121 | 1.57E-19 | IPR035967 |
| Gene3D | G3DSA:3.10.20.90 | - | 673 | 779 | 1.8E-36 | - |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 54 | 126 | 6.2E-21 | IPR035967 |
| Gene3D | G3DSA:1.10.10.790 | Surp module | 183 | 240 | 4.7E-22 | IPR035967 |
| SMART | SM00648 | surpneu2 | 68 | 121 | 5.2E-20 | IPR000061 |
| SMART | SM00213 | ubq_7 | 700 | 773 | 3.1E-11 | IPR000626 |
| SMART | SM00648 | surpneu2 | 188 | 241 | 8.9E-17 | IPR000061 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 70 | 112 | 16.155375 | IPR000061 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 700 | 777 | 14.57784 | IPR000626 |
| ProSiteProfiles | PS50128 | SURP motif repeat profile. | 190 | 232 | 15.466038 | IPR000061 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| Coils | Coil | Coil | 27 | 47 | - | - |
| Coils | Coil | Coil | 268 | 288 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14650.1 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein. | 0 |
| RefSeq | XP_048622356.1 | probable splicing factor 3A subunit 1 [Brassica napus] | 0 |
| Q8RXF1 | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W073 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013088 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg22401, jg22404, jg22430 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4793 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035218 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g025280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23856, Sbi_jg7688 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12337 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001198 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51992, Sgl57295, Sgl66083, Sgl70397 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016586, gene:ENSEOMG00000019387 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019100, CQ.Regalona.r1.2AG0020840 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013900 |
| Apiaceae | Apium graveolens | 2 | Ag7G00461, Ag9G02531 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G003620, COCNU_08G006030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704394, gene-LOC103714453, gene-LOC120112891 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.181.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G12418 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G14640.1, AT1G14650.1, AT4G16200.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10006856m.g.v1.0, Thhalv10014821m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g006090.2N, BniB06g039930.2N, BniB08g033860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1536 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1567 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g00160 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0015s00045.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11136 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.40 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006894, Pov_00012007, Pov_00021971 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08911, Lb2G08914 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.908, BH02.1217, CH02.1345 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0004520, gene-QOZ80_1BG0052950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0323810.1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_013974, gene-QYE76_013975, gene-QYE76_013977 ... |
| Poaceae | Oryza coarctata | 2 | Oco02G007630, Oco03G006640 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g14780.2 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G112000, gene-BS78_03G112100 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604009, Pt_Chr0605275 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G026650, Chr03G001540, Chr05G004380 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G316600, Tel3E01G316800, Tel3E01G828000 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG071520, gene_TRIDC3AG071530 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G503600.1, TraesCS3B02G211900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128190_P001, Zm00001eb333220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9698 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1122, evm.TU.LG09.852, evm.TU.LG10.429 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00260, gene.Posoc04g22410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.661, evm.TU.Scaffold_17_RagTag.663 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11544 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11300, nbisL1-mrna-17191 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12282, nbisL1-mrna-12283, nbisL1-mrna-19975 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008749 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10757, nbisL1-mrna-985 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14386, nbisL1-mrna-8339, nbisL1-mrna-8340 |
| Salicaceae | Populus euphratica | 4 | populus_peu13954, populus_peu13956, populus_peu23146 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621140 |
| Solanaceae | Solanum chilense | 1 | SOLCI000151400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011251, gene-LOC107017700 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.18967_chr07_+, gene_10054, gene_9691 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28480.v3.1 |