Basic Information
Locus ID:
BniB03g006060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2403624 | 2411846 | + | BniB03g006060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 100,432.66 Da | 47.23 | 64.12 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 185 | 294 | 2.84875E-51 | - |
| CDD | cd14273 | UBA_TAP-C_like | 19 | 50 | 3.06629E-6 | - |
| CDD | cd01767 | UBX | 387 | 436 | 1.94372E-10 | - |
| Pfam | PF14555 | UBA-like domain | 14 | 53 | 2.9E-10 | - |
| Pfam | PF13899 | Thioredoxin-like | 187 | 266 | 1.6E-12 | - |
| Pfam | PF00789 | UBX domain | 385 | 435 | 1.5E-6 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 371 | 437 | 6.2E-11 | IPR029071 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 524 | 622 | 2.02E-7 | IPR036236 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 165 | 296 | 1.23E-38 | IPR036249 |
| SUPERFAMILY | SSF46934 | UBA-like | 9 | 50 | 2.37E-5 | IPR009060 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 580 | 659 | 2.1E-7 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 9 | 53 | 2.1E-9 | - |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 506 | 570 | 1.4E-5 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 184 | 295 | 6.9E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 381 | 448 | 7.0E-9 | - |
| SMART | SM00594 | 45neu3 | 170 | 293 | 8.5E-51 | IPR006577 |
| SMART | SM00355 | c2h2final6 | 525 | 547 | 0.025 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 602 | 622 | 88.0 | IPR013087 |
| SMART | SM00355 | c2h2final6 | 567 | 597 | 110.0 | IPR013087 |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 525 | 547 | 10.969637 | IPR013087 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 324 | 343 | 10.619784 | IPR003903 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 381 | 435 | 15.646656 | IPR001012 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 527 | 547 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 353 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_013657390.2 | protein indeterminate-domain 6, chloroplastic-like isoform X1 [Brassica napus] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A817AK84 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A08P31920.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5078, jg7412 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25044 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026975 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131610 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13589, Sbi_jg52311 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9545 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017576 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33380, Sgl38733 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000294, gene:ENSEOMG00000003156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0021060, CQ.Regalona.r1.6BG0022180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219310 |
| Apiaceae | Apium graveolens | 2 | Ag1G02098, AgUnG01250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005860 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715481, gene-LOC103717618, gene-LOC103723650 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.551.V1.1, AsparagusV1_Unassigned.667.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G20837, Ftri8G16822 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14570.2 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10007578m.g.v1.0, Thhalv10027144m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12920.v2.2, Sp7g12240.v2.2, Sp7g12270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g006060.2N, BniB06g039800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1713 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g08760, gene.Cymno14g06990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g13520, gene.Thate08g16790 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.984 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025313, Pov_00030981, Pov_00041577 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04786, Lb1G04788 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2665, BH09.2896, CH09.3110 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299910, gene-QOZ80_4BG0330630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0211630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047248, gene-QYE76_047329 |
| Poaceae | Oryza coarctata | 2 | Oco07G018850, Oco08G018120 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g57520.1, LOC_Os07g19390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G278400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300232, Pt_Chr0300279 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001300, Chr25G001000, Chr26G017980, Chr30G001000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G935400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG076570, gene_TRIDC2BG083820 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G549200.1, TraesCS2B02G579800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb066780_P001, Zm00001eb433390_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23163 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20662 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1320, evm.TU.LG21.1238 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g16030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.682 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23366 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14184 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20005 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004531 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10742 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14368 |
| Salicaceae | Populus euphratica | 2 | populus_peu07285, populus_peu21284 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614034, gene-LOC132638056 |
| Solanaceae | Solanum chilense | 2 | SOLCI002864700, SOLCI004406300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018324, gene-LOC107027895 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11049 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2097, TC04G0294 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24820.v3.1 |