Basic Information
Locus ID:
BniB03g005980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2386470 | 2386888 | - | BniB03g005980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 8,938.87 Da | 69.97 | 77.27 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 70 | 8.73713E-28 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 1 | 69 | 4.6E-20 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 75 | 3.91E-24 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 77 | 5.6E-26 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 75 | 25.487133 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_018451151.1 | PREDICTED: ubiquitin-conjugating enzyme E2 1-like [Raphanus sativus] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KUH3 | ubiquitin-conjugating enzyme E2 1-like OS=Raphanus sativus OX=3726 GN=LOC108822539 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri13G14664 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g005980.2N |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G221600 |