Basic Information
Locus ID:
BniB03g005970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
histone ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2384762 | 2385604 | - | BniB03g005970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 18,482.67 Da | 54.67 | 67.48 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 15 | 152 | 2.21292E-69 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 15 | 151 | 1.0E-50 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 157 | 1.14E-59 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 8 | 159 | 5.3E-63 | IPR016135 |
| SMART | SM00212 | ubc_7 | 14 | 157 | 8.2E-64 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 11 | 157 | 56.814499 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 84 | 99 | - | IPR023313 |
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_033133817.1 | ubiquitin-conjugating enzyme E2 1 isoform X2 [Brassica rapa] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KTD3 | ubiquitin-conjugating enzyme E2 1-like OS=Raphanus sativus OX=3726 GN=LOC108822540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology