Basic Information
Locus ID:
BniB03g005530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2203098 | 2207247 | - | BniB03g005530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 94,204.99 Da | 57.13 | 88.49 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 45 | 75 | 1.8E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 426 | 462 | 1.5E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 275 | 395 | 6.9E-6 | IPR006527 |
| Pfam | PF07734 | F-box associated | 651 | 770 | 3.4E-6 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 521 | 743 | 2.22E-9 | IPR011043 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 146 | 368 | 9.94E-8 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 426 | 476 | 2.35E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 92 | 4.84E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 513 | 738 | 7.8E-6 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 419 | 469 | 1.6E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 86 | 2.0E-5 | - |
| SMART | SM00256 | fbox_2 | 47 | 87 | 1.6E-5 | IPR001810 |
| SMART | SM00256 | fbox_2 | 428 | 468 | 4.7E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 529 | 735 | 6.4E-15 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 154 | 359 | 2.4E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 422 | 471 | 9.550458 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 41 | 87 | 9.841896 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13200.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018450251.1 | PREDICTED: putative F-box/kelch-repeat protein At1g13200 [Raphanus sativus] | 0 |
| Q9SAF4 | Putative F-box/kelch-repeat protein At1g13200 OS=Arabidopsis thaliana OX=3702 GN=At1g13200 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8S9K1Q7 | FBA_1 domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00040035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |