Basic Information
Locus ID:
BniB03g005390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
AFB3
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 2134679 | 2136594 | - | BniB03g005390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 66,420.95 Da | 49.42 | 95.69 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 74 | 120 | 1.1E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 15 | 54 | 1.1E-16 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 162 | 178 | 0.047 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 369 | 527 | 3.37E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 30 | 415 | 3.14E-27 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 53 | 9.2E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 54 | 590 | 4.6E-173 | IPR032675 |
| SMART | SM00256 | fbox_2 | 17 | 58 | 0.0022 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_009110620.1 | protein AUXIN SIGNALING F-BOX 3 [Brassica rapa] | 0 |
| Q9LPW7 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VYF3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology