Basic Information
Locus ID:
BniB03g004690.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 1864026 | 1865924 | - | BniB03g004690.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 57,116.69 Da | 37.86 | 86.97 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 49 | 368 | 4.5E-73 | IPR000490 |
| Pfam | PF07983 | X8 domain | 386 | 457 | 5.1E-22 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 49 | 368 | 1.74E-81 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 379 | 489 | 1.7E-11 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 48 | 375 | 3.8E-110 | - |
| SMART | SM00768 | X8_cls | 385 | 470 | 3.2E-53 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 283 | 296 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_009110702.1 | glucan endo-1,3-beta-glucosidase 1 [Brassica rapa] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A078G8M2 | glucan endo-1,3-beta-D-glucosidase OS=Brassica napus OX=3708 GN=BnaA08g25120D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology