Basic Information
Locus ID:
BniB03g004180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 1673619 | 1680359 | - | BniB03g004180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 132,361.02 Da | 51.41 | 77.21 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 449 | 648 | 1.49065E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 649 | 781 | 1.81335E-74 | - |
| Pfam | PF09382 | RQC domain | 871 | 984 | 2.0E-21 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 783 | 862 | 1.6E-15 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1019 | 1084 | 9.0E-15 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 665 | 771 | 1.5E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 460 | 628 | 2.6E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 422 | 790 | 7.38E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 647 | 913 | 4.3E-57 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1018 | 1088 | 5.01E-13 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 421 | 648 | 5.8E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 870 | 981 | 2.0E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 649 | 864 | 3.6E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1009 | 1094 | 2.5E-22 | IPR044876 |
| SMART | SM00341 | hrdc7 | 1010 | 1094 | 3.5E-4 | IPR002121 |
| SMART | SM00490 | helicmild6 | 691 | 772 | 7.8E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 454 | 657 | 4.0E-31 | IPR014001 |
| SMART | SM00956 | RQC_2 | 872 | 983 | 4.3E-30 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 450 | 923 | 9.1E-165 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 666 | 825 | 19.302551 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1012 | 1094 | 17.076479 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 681 | 722 | 9.0016 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 466 | 641 | 22.568316 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 580 | 589 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1116 | - | - |
| Coils | Coil | Coil | 317 | 347 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_048622284.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Brassica napus] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7PSG7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_076099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology