Basic Information
Locus ID:
BniB03g002800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 1112917 | 1115997 | + | BniB03g002800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 113,452.10 Da | 42.80 | 101.84 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 312 | 371 | 4.9E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 68 | 4.0E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 527 | 586 | 1.5E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 96 | 118 | 0.48 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 711 | 971 | 3.5E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 240 | 299 | 9.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 351 | 1.19E-58 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 704 | 998 | 2.16E-69 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 251 | 593 | 3.02E-70 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 805 | 1012 | 6.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 250 | 6.6E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 181 | 1.4E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 332 | 623 | 3.6E-82 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 260 | 331 | 1.8E-21 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 707 | 804 | 2.2E-18 | - |
| SMART | SM00369 | LRR_typ_2 | 334 | 358 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 549 | 573 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 455 | 477 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 406 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 53.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 709 | 998 | 2.0E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 430 | 454 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 525 | 548 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 117 | 17.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 709 | 1005 | 39.551891 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 847 | 859 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 715 | 740 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08590.1 | Leucine-rich receptor-like protein kinase family protein. similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) | 0 |
| RefSeq | XP_018451866.1 | PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Raphanus sativus] | 0 |
| Q9FRS6 | Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX=3702 GN=PXL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B2D3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013323 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology