Basic Information
Locus ID:
BniB03g001340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 554088 | 557840 | + | BniB03g001340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 66,567.07 Da | 29.45 | 101.32 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 295 | 397 | 7.17104E-26 | - |
| CDD | cd00030 | C2 | 469 | 569 | 4.79864E-27 | - |
| Pfam | PF00168 | C2 domain | 467 | 569 | 1.7E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 294 | 397 | 8.5E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 103 | 279 | 4.2E-14 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 291 | 422 | 2.7E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 463 | 584 | 2.7E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 286 | 421 | 3.0E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 447 | 586 | 3.1E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 468 | 566 | 8.4E-26 | IPR000008 |
| SMART | SM00239 | C2_3c | 294 | 394 | 7.8E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 274 | 395 | 20.356972 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 449 | 567 | 21.613974 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 98 | 280 | 29.374384 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 510 | 523 | 1.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 532 | 540 | 1.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 484 | 496 | 1.7E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_022571842.2 | synaptotagmin-5 [Brassica napus] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B1B1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013442 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology