Basic Information
Locus ID:
BniB03g001110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 463549 | 465921 | - | BniB03g001110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 49,094.96 Da | 54.55 | 74.15 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 42 | 127 | 6.23363E-46 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 265 | 328 | 2.63008E-22 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 265 | 332 | 7.7E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 44 | 127 | 8.4E-17 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 262 | 335 | 6.15E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 140 | 1.57E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 142 | 5.7E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 246 | 342 | 2.3E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 264 | 333 | 4.2E-19 | IPR009071 |
| SMART | SM01014 | ARID_2 | 37 | 127 | 2.7E-28 | - |
| SMART | SM00501 | bright_3 | 41 | 132 | 6.6E-27 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 131 | 25.625031 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 265 | 332 | 15.033357 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 259 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_018449912.1 | PREDICTED: high mobility group B protein 15-like [Raphanus sativus] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VY49 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_013466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology