Basic Information
Locus ID:
BniB03g000920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
generation of catalytic spliceosome for first transesterification step
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 391232 | 392477 | + | BniB03g000920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 12,904.72 Da | 35.06 | 88.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16656 | RING-Ubox_PRP19 | 3 | 54 | 4.04012E-26 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 53 | 8.48E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | 1.1E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 66 | 5.1E-16 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 70 | 23.725933 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04510.1 | MOS4-associated complex 3A. Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_022547250.2 | pre-mRNA-processing factor 19 homolog 1 [Brassica napus] | 0 |
| Q94BR4 | Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=PRP19A PE=1 SV=1 | 0 | |
| TrEMBL | A0A397XHT9 | Pre-mRNA-processing factor 19 OS=Brassica campestris OX=3711 GN=BRARA_J00263 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg49689, Sbi_jg61105 |
| Brassicaceae | Brassica nigra | 1 | BniB03g000920.2N |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21216, nbis-gene-58197 |