Basic Information
Locus ID:
BniB03g000350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
clathrin assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B3 | 126149 | 128261 | + | BniB03g000350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 45,736.39 Da | 43.14 | 91.37 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 87 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 228 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 174 | 0.0065 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 274 | 1.51E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 323 | 1.9E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 184 | 228 | 0.098 | IPR001680 |
| SMART | SM00320 | WD40_4 | 43 | 87 | 3.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 176 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 128 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 192 | 233 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 237 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 87 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 87 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 215 | 229 | - | IPR019775 |
| Hamap | MF_03056 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. | 25 | 408 | 22.241386 | IPR028884 |
| Coils | Coil | Coil | 394 | 414 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03110.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009111168.1 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Brassica rapa] | 0 |
| Q54UI3 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Dictyostelium discoideum OX=44689 GN=wdr4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A397YKR6 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Brassica campestris OX=3711 GN=BRARA_H03098 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35317, jg8780 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19403 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000362 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30737, Sbi_jg58524 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28397 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004963 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55006, Sgl60265 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007408, gene:ENSEOMG00000022237 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024930, CQ.Regalona.r1.5BG0026410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026950 |
| Apiaceae | Apium graveolens | 1 | Ag9G02133 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718085 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1891.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G30253 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G03110.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007706m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g02120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g000350.2N, BniB06g047620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0647s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g40370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6309, nbisL1-mrna-9669 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1096 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008028, Pov_00036794 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00569 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.757, CH01.752, Contig309.104 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0216400, gene-QOZ80_3BG0261680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061921 |
| Poaceae | Oryza coarctata | 2 | Oco05G023430, Oco06G024320 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G083100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107129 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005400, Chr04G028450, Chr07G027420, Chr12G037770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G613000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056320, gene_TRIDC5BG060320 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G384800.1, TraesCS5B02G389600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb215000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16130 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2810 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2338, evm.TU.LG14.1507 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1003 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11344 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5060 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11616 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.315 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013017 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9975 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7623 |
| Salicaceae | Populus euphratica | 1 | populus_peu15061 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605630 |
| Solanaceae | Solanum chilense | 1 | SOLCI002493800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022043 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2256_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0842 |
| Zosteraceae | Zostera marina | 1 | Zosma06g26360.v3.1 |