Basic Information
Locus ID:
BniB02g089620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 70765179 | 70767333 | + | BniB02g089620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 51,694.61 Da | 43.09 | 92.52 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 79 | 460 | 2.94821E-113 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 340 | 465 | 2.4E-37 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 127 | 338 | 8.1E-23 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 71 | 458 | 2.35E-79 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 19 | 256 | 7.7E-45 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 338 | 463 | 3.4E-33 | - |
| SMART | SM00119 | hect_3 | 90 | 465 | 2.4E-62 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 103 | 465 | 36.602921 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_006411652.1 | E3 ubiquitin-protein ligase UPL3 [Eutrema salsugineum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TF75 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091723 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology