Basic Information
Locus ID:
BniB02g089480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 70708570 | 70709748 | - | BniB02g089480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 44,024.18 Da | 55.52 | 81.99 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 42 | 86 | 1.0E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 189 | 233 | 1.3E-9 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 147 | 185 | 6.3E-5 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 93 | 375 | 3.66E-39 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 89 | 2.09E-7 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 94 | 362 | 3.5E-24 | IPR015915 |
| SMART | SM00612 | kelc_smart | 152 | 198 | 0.019 | IPR006652 |
| SMART | SM00256 | fbox_2 | 46 | 86 | 5.0E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 199 | 251 | 0.29 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 86 | 11.722999 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_013598018.1 | PREDICTED: F-box/kelch-repeat protein At4g38940 [Brassica oleracea var. oleracea] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3DIF4 | F-box domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106306095 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10510.1, AT4G38940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025413m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g36900.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g089480.2N |