Basic Information
Locus ID:
BniB02g088610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 70311238 | 70313253 | - | BniB02g088610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 64,301.10 Da | 49.38 | 83.48 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 437 | 2.6E-71 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 124 | 1.1E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 124 | 1.02E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 129 | 1.3E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 104 | 10.199271 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 461 | 74.806915 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 498 | - | - |
| Coils | Coil | Coil | 500 | 520 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_009138500.2 | BTB/POZ domain-containing protein NPY5 [Brassica rapa] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7P3V0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092683 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology