Basic Information
Locus ID:
BniB02g087020.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
tRNA processing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 69539424 | 69544850 | - | BniB02g087020.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 99,128.55 Da | 34.87 | 77.67 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 606 | 919 | 5.33488E-82 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 750 | 782 | 0.065 | IPR001680 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 26 | 343 | 6.5E-82 | IPR000490 |
| Pfam | PF00400 | WD domain, G-beta repeat | 606 | 642 | 1.7E-4 | IPR001680 |
| Pfam | PF07983 | X8 domain | 369 | 439 | 2.2E-20 | IPR012946 |
| Pfam | PF00400 | WD domain, G-beta repeat | 889 | 918 | 0.0094 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 831 | 873 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 790 | 825 | 5.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 699 | 734 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 26 | 344 | 1.48E-90 | IPR017853 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 603 | 918 | 3.11E-70 | IPR036322 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 25 | 351 | 3.3E-127 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 363 | 452 | 7.3E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 549 | 919 | 5.0E-102 | IPR015943 |
| SMART | SM00320 | WD40_4 | 694 | 734 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 684 | 5.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 603 | 642 | 2.5E-9 | IPR001680 |
| SMART | SM00768 | X8_cls | 368 | 452 | 1.3E-45 | IPR012946 |
| SMART | SM00320 | WD40_4 | 828 | 873 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 786 | 825 | 1.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 879 | 919 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 782 | 7.6E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 887 | 927 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 887 | 927 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 793 | 834 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 701 | 738 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 749 | 791 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 701 | 743 | 11.410742 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 610 | 651 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 793 | 829 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 610 | 642 | 11.708317 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 721 | 735 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 769 | 783 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 629 | 643 | 5.8E-5 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 629 | 643 | 1.1E-25 | IPR001632 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 721 | 735 | 5.8E-5 | IPR020472 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 648 | 663 | 1.1E-25 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 666 | 683 | 1.1E-25 | IPR001632 |
| PRINTS | PR00319 | Beta G protein (transducin) signature | 610 | 626 | 1.1E-25 | IPR001632 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 366 | - | - |
| Coils | Coil | Coil | 552 | 572 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04062 (Chemokine signaling pathway)
map04062 (Chemokine signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34480.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_018480344.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Raphanus sativus] | 0 |
| Q9M069 | Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana OX=3702 GN=At4g34480 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8D9GQU1 | glucan endo-1,3-beta-D-glucosidase OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A03P64610.2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1000, jg28756 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21634, gene_21638 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010250 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217550 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12453, Sbi_jg45863 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20220 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022438 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56089, Sgl61422, Sgl61657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020222, gene:ENSEOMG00000036532 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007760, CQ.Regalona.r1.9AG0016760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30114200 |
| Apiaceae | Apium graveolens | 2 | Ag6G02583, Ag9G00099 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G019180, COCNU_14G009540, scaffold001875G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702709, gene-LOC103705391 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.682.V1.1, AsparagusV1_07.3155.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri3G01076, Ftri4G27553, Ftri8G00682 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025475m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32260.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087020.2N, BniB03g020680.2N, BniB04g057040.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0090 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0106 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01370, gene.Cymno14g06510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.126 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035807 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10391, Lb2G13465, Lb3G17244 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1407, BH01.1244, CH01.1288 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0222350, gene-QOZ80_3BG0267440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0333760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063185 |
| Poaceae | Oryza coarctata | 2 | Oco05G019840, Oco06G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104764, Pt_Chr0105153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G008620, Chr04G025640, Chr07G024520, Chr12G028630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G042600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG045230, gene_TRIDC4BG003440 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G294000.1, TraesCS4B02G019900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052290_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20584 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3115, Zma_g788 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1842, evm.TU.LG22.22 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26430, gene.Posoc06g18490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2278, evm.TU.Scaffold_2_RagTag.224 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4983 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14094, nbisL1-mrna-18731 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3282, nbisL1-mrna-9899 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.819, evm.TU.utg000016l.94 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005869, Maker00017326 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14743, nbisL1-mrna-4652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22418 |
| Salicaceae | Populus euphratica | 2 | populus_peu08882, populus_peu36467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599163 |
| Solanaceae | Solanum chilense | 1 | SOLCI000662500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006105 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.18264_chr09_+, gene_7825 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0478, TC12G1042 |
| Zosteraceae | Zostera marina | 1 | Zosma06g02540.v3.1 |