Basic Information
Locus ID:
BniB02g086220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 69250413 | 69257128 | - | BniB02g086220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 139,692.91 Da | 36.45 | 76.43 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 161 | 428 | 1.72542E-43 | - |
| CDD | cd15798 | PMEI-like_3 | 749 | 899 | 1.82399E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 346 | 0.0012 | IPR001680 |
| Pfam | PF10075 | CSN8/PSMD8/EIF3K family | 498 | 628 | 1.0E-18 | IPR033464 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 1.7E-6 | IPR001680 |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 746 | 893 | 5.8E-24 | IPR006501 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 178 | 236 | 4.0E-6 | IPR024977 |
| Pfam | PF01095 | Pectinesterase | 939 | 1236 | 4.5E-133 | IPR000070 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 745 | 897 | 1.96E-26 | IPR035513 |
| SUPERFAMILY | SSF48371 | ARM repeat | 440 | 566 | 3.91E-42 | IPR016024 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 568 | 637 | 6.26E-11 | IPR036390 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 153 | 428 | 1.87E-57 | IPR036322 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 936 | 1245 | 8.72E-104 | IPR011050 |
| Gene3D | G3DSA:1.25.40.250 | ARM repeat; domain 1 | 440 | 556 | 1.2E-40 | IPR016020 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 429 | 3.6E-122 | IPR015943 |
| Gene3D | G3DSA:2.160.20.10 | - | 933 | 1250 | 3.7E-111 | IPR012334 |
| Gene3D | G3DSA:1.10.10.10 | - | 559 | 658 | 1.2E-15 | IPR036388 |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 743 | 899 | 1.6E-28 | IPR035513 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 2.7E-9 | IPR001680 |
| SMART | SM00856 | PMEI_2 | 742 | 893 | 1.8E-39 | IPR006501 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 346 | 4.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 252 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 431 | 3.6 | IPR001680 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 744 | 897 | 5.2E-21 | IPR006501 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 355 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 220 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 211 | 9.019239 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 295 | 11.761044 | - |
| ProSitePatterns | PS00503 | Pectinesterase signature 2. | 1083 | 1092 | - | IPR033131 |
| Hamap | MF_03010 | Eukaryotic translation initiation factor 3 subunit K [EIF3K]. | 439 | 659 | 23.3515 | IPR009374 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 740 | - | - |
| Coils | Coil | Coil | 806 | 840 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33230.1 | Plant invertase/pectin methylesterase inhibitor superfamily. | 0 |
| RefSeq | XP_013706076.1 | putative pectinesterase/pectinesterase inhibitor 45 [Brassica napus] | 0 |
| Q9SMY6 | Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana OX=3702 GN=PME45 PE=2 SV=1 | 0 | |
| TrEMBL | M4D4M6 | Eukaryotic translation initiation factor 3 subunit K OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology