Basic Information
Locus ID:
BniB02g084270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 68329362 | 68330565 | - | BniB02g084270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 42,429.19 Da | 44.29 | 71.38 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 137 | 172 | 1.0E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 184 | 218 | 7.1E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 22 | 65 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 73 | 352 | 2.35E-29 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 81 | 6.15E-7 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 49 | 285 | 1.3E-22 | IPR015915 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 4.6E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 11.934954 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39560.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018489395.1 | PREDICTED: F-box/kelch-repeat protein At5g39560-like [Raphanus sativus] | 0 |
| Q6NL02 | F-box/kelch-repeat protein At5g39560 OS=Arabidopsis thaliana OX=3702 GN=At5g39560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7NZE6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_090243 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39560.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10017575m.g.v1.0, Thhalv10026834m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB02g084270.2N, BniB05g008250.2N, BniB05g008260.2N |