Basic Information
Locus ID:
BniB02g084110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
jacalin-related lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 68261685 | 68263275 | - | BniB02g084110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 49,068.13 Da | 44.29 | 75.75 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 280 | 420 | 1.25535E-26 | IPR033734 |
| Pfam | PF00646 | F-box domain | 3 | 42 | 7.0E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 99 | 247 | 4.9E-29 | IPR006527 |
| Pfam | PF01419 | Jacalin-like lectin domain | 280 | 420 | 7.0E-23 | IPR001229 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 95 | 1.83E-15 | IPR036047 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 269 | 420 | 1.23E-25 | IPR036404 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 97 | 7.3E-8 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 271 | 421 | 9.4E-26 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 280 | 421 | 5.9E-26 | IPR001229 |
| SMART | SM00256 | fbox_2 | 4 | 44 | 4.7E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 100 | 220 | 7.0E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 12.226393 | IPR001810 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 269 | 421 | 40.140915 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59610.1 | F-box family protein / jacalin lectin family protein. | 0 |
| RefSeq | XP_048620458.1 | jacalin-related lectin 38-like [Brassica napus] | 0 |
| Q9M1A7 | Jacalin-related lectin 38 OS=Arabidopsis thaliana OX=3702 GN=JAL38 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816N5E8 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C07P57010.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |