Basic Information
Locus ID:
BniB02g083260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67865874 | 67869479 | + | BniB02g083260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 91,276.62 Da | 49.93 | 84.00 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 543 | 676 | 1.00234E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 545 | 675 | 3.4E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 697 | 737 | 1.6E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 505 | 741 | 1.97E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 504 | 676 | 1.8E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 677 | 749 | 1.8E-94 | - |
| SMART | SM00382 | AAA_5 | 541 | 678 | 5.8E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 648 | 667 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 469 | - | - |
| Coils | Coil | Coil | 730 | 764 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.2 | - | 0 |
| RefSeq | XP_009137753.1 | uncharacterized protein LOC103861800 [Brassica rapa] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7U1Z3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_070121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology