Basic Information
Locus ID:
BniB02g082960.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
PORA
Description:
Protochlorophyllide reductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67760306 | 67761019 | + | BniB02g082960.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 26,623.06 Da | 46.26 | 75.65 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 38 | 90 | 1.42246E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 40 | 88 | 2.3E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 39 | 94 | 1.61E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 104 | 7.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 40 | 88 | 2.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 40 | 89 | 12.69582 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 55 | 64 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_013598476.1 | PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Brassica oleracea var. oleracea] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q8Q8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_070158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology