Basic Information
Locus ID:
BniB02g082560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67618445 | 67621764 | - | BniB02g082560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 87,112.59 Da | 37.71 | 85.51 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 398 | 698 | 1.82216E-173 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 82 | 381 | 4.68422E-180 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 404 | 692 | 2.3E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 398 | 699 | 9.16E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 82 | 379 | 5.23E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 81 | 381 | 3.1E-34 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 398 | 699 | 5.8E-43 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 398 | 699 | 43.326481 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 82 | 382 | 41.702461 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_009137609.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Brassica rapa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3P6EKK6 | glycerophosphodiester phosphodiesterase (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC7T45990H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology