Basic Information
Locus ID:
BniB02g081620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67251511 | 67251991 | + | BniB02g081620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 14,265.74 Da | 49.49 | 121.39 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1 | 77 | 6.6E-21 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 77 | 2.35E-26 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 77 | 2.0E-27 | - |
| SMART | SM00220 | serkin_6 | 1 | 126 | 0.0062 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 130 | 18.577036 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 16 | 28 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54180.1 | cyclin-dependent kinase B1;1. Arabidopsis homolog of yeast cdc2, a protein kinase (cyclin-dependent kinase) that plays a central role in control of the mitotic cell cycle. | 0 |
| RefSeq | XP_018484291.1 | PREDICTED: cyclin-dependent kinase B1-1 [Raphanus sativus] | 0 |
| P25859 | Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana OX=3702 GN=CDKB1-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B8X9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_008476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 12 | Sgl03515, Sgl08655, Sgl13622, Sgl14340, Sgl18805, Sgl19506 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110907 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081620.2N, BniB07g035400.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G022720 |
| Zosteraceae | Zostera marina | 1 | Zosma01g30210.v3.1 |