Basic Information
Locus ID:
BniB02g081270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67101967 | 67107085 | - | BniB02g081270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 99,496.80 Da | 56.10 | 64.96 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 61 | 160 | 1.50707E-11 | - |
| CDD | cd00159 | RhoGAP | 221 | 359 | 8.21808E-30 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 638 | 715 | 2.3E-17 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 221 | 364 | 1.4E-29 | IPR000198 |
| Pfam | PF00169 | PH domain | 60 | 164 | 3.2E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 32 | 164 | 8.49E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 220 | 413 | 1.08E-33 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 46 | 166 | 2.3E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 190 | 412 | 1.1E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 218 | 408 | 3.3E-30 | IPR000198 |
| SMART | SM00233 | PH_update | 59 | 167 | 2.6E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 58 | 165 | 14.6862 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 212 | 411 | 29.347036 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 517 | - | - |
| Coils | Coil | Coil | 811 | 831 | - | - |
| Coils | Coil | Coil | 625 | 666 | - | - |
| Coils | Coil | Coil | 593 | 620 | - | - |
| Coils | Coil | Coil | 684 | 718 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. | 0 |
| RefSeq | XP_033143794.1 | rho GTPase-activating protein REN1-like [Brassica rapa] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P6ADZ6 | Rho GTPase-activating protein REN1-like OS=Brassica campestris OX=3711 GN=BRAA03T14598Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology