Basic Information
Locus ID:
BniB02g081260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase 16-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 67095917 | 67100374 | - | BniB02g081260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 111,877.42 Da | 56.10 | 75.43 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 551 | 854 | 6.1E-48 | IPR001394 |
| Pfam | PF01753 | MYND finger | 77 | 114 | 1.9E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 72 | 116 | 1.38E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 547 | 862 | 4.32E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 543 | 861 | 8.6E-93 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 118 | 1.7E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.706373 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 551 | 857 | 49.444695 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 552 | 567 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 1008 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_018461365.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Raphanus sativus] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0LM96 | ubiquitin carboxyl-terminal hydrolase 16-like OS=Raphanus sativus OX=3726 GN=LOC108832375 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology