Basic Information
Locus ID:
BniB02g080200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 66551405 | 66554762 | + | BniB02g080200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 75,615.27 Da | 49.16 | 71.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 102 | 191 | 1.58545E-7 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 469 | 669 | 5.40589E-98 | - |
| Pfam | PF00989 | PAS fold | 83 | 187 | 6.1E-8 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 463 | 657 | 3.8E-53 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 437 | 667 | 9.71E-69 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 82 | 193 | 6.63E-16 | IPR035965 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 79 | 209 | 8.4E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 456 | 540 | 2.2E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 541 | 673 | 3.2E-45 | - |
| SMART | SM00220 | serkin_6 | 463 | 673 | 1.2E-35 | IPR000719 |
| SMART | SM00091 | pas_2 | 81 | 149 | 0.0097 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 82 | 193 | 1.3E-10 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 79 | 151 | 9.652744 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 463 | 678 | 39.22681 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 469 | 490 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 582 | 594 | - | IPR008271 |
| Coils | Coil | Coil | 18 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_022572579.1 | proline-rich receptor-like protein kinase PERK5 [Brassica napus] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P589 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology