Basic Information
Locus ID:
BniB02g080150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 66512614 | 66516866 | - | BniB02g080150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 25,022.27 Da | 61.59 | 84.16 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 3.64523E-42 | IPR033896 |
| Pfam | PF01486 | K-box region | 83 | 170 | 9.4E-25 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.2E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 83 | 3.53E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 2.8E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.5E-39 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.356485 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 14.901746 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 4.7E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 4.7E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 4.7E-30 | IPR002100 |
| Coils | Coil | Coil | 120 | 169 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_009137303.2 | agamous-like MADS-box protein AGL19 [Brassica rapa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A398A4L7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T14459Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology