Basic Information
Locus ID:
BniB02g079680.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 66296628 | 66303045 | + | BniB02g079680.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 83,552.32 Da | 33.87 | 90.99 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 416 | 459 | 8.2E-8 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 658 | 710 | 2.8E-8 | IPR005174 |
| Pfam | PF00026 | Eukaryotic aspartyl protease | 50 | 358 | 3.3E-70 | IPR033121 |
| SUPERFAMILY | SSF50630 | Acid proteases | 24 | 358 | 1.28E-76 | IPR021109 |
| SUPERFAMILY | SSF81383 | F-box domain | 412 | 453 | 1.31E-6 | IPR036047 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 216 | 366 | 1.1E-27 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 15 | 214 | 8.7E-47 | IPR021109 |
| Gene3D | G3DSA:1.20.1280.50 | - | 417 | 456 | 2.8E-6 | - |
| SMART | SM00256 | fbox_2 | 420 | 460 | 3.8E-4 | IPR001810 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 50 | 368 | 51.273735 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 65 | 76 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 56 | 76 | 1.5E-19 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 340 | 355 | 1.5E-19 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 208 | 221 | 1.5E-19 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 259 | 270 | 1.5E-19 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69090.1 | Protein of unknown function (DUF295). | 0 |
| RefSeq | XP_018477825.1 | PREDICTED: putative F-box protein At5g66830 [Raphanus sativus] | 0 |
| Q9LQB0 | F-box protein At1g69090 OS=Arabidopsis thaliana OX=3702 GN=At1g69090 PE=4 SV=2 | 0 | |
| TrEMBL | A0A8X7TFH4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091456 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |