Basic Information
Locus ID:
BniB02g078890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 65915960 | 65922274 | - | BniB02g078890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.34 | 123,209.88 Da | 38.44 | 81.33 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 907 | 940 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 487 | 0.0089 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 757 | 1085 | 1.57E-29 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 402 | 945 | 4.24E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 738 | 956 | 6.2E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 958 | 1096 | 4.7E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 540 | 675 | 8.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 327 | 539 | 2.4E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 901 | 940 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1041 | 1083 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 0.98 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 990 | 1032 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 379 | 0.15 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.6E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 858 | 898 | 2.2 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.065662 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 908 | 943 | 10.706503 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.839112 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 597 | 628 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 908 | 949 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 489 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 733 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_013598359.1 | PREDICTED: topless-related protein 3 [Brassica oleracea var. oleracea] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TIW9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094487 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology