Basic Information
Locus ID:
BniB02g076620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 64857642 | 64862648 | - | BniB02g076620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 92,080.57 Da | 48.65 | 76.81 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 262 | 3.21391E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 130 | 9.0E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 679 | 835 | 6.3E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 7.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 2.6E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 45 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 88 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 295 | 5.76E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 299 | 2.3E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 134 | 8.7E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 7.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 5.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 2.7E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.393768 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.526274 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.501034 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 3.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 3.1E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 839 | 20.19821 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 605 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013736870.2 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Brassica napus] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A816N4Q0 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Brassica napus OX=3708 GN=DARMORV10_C07P44130.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology