Basic Information
Locus ID:
BniB02g075780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 64446030 | 64449343 | + | BniB02g075780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 112,553.04 Da | 35.20 | 95.10 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 535 | 556 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 271 | 331 | 1.3E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 440 | 490 | 2.4E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 368 | 389 | 0.041 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 128 | 150 | 1.4 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 74 | 2.0E-5 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 711 | 982 | 1.0E-46 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 417 | 1.1E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 336 | 618 | 6.46E-48 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 711 | 986 | 1.2E-72 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 790 | 1003 | 1.8E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 192 | 1.4E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 193 | 326 | 2.0E-37 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 687 | 789 | 5.4E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 336 | 632 | 1.2E-81 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 438 | 461 | 56.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 708 | 985 | 8.6E-35 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 294 | 317 | 2.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 463 | 486 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 270 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 342 | 366 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 126 | 150 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 367 | 390 | 170.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 708 | 990 | 38.322235 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 837 | 849 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 714 | 737 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61480.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009136481.1 | leucine-rich repeat receptor-like protein kinase TDR [Brassica rapa] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q5Q0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_070622 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology