Basic Information
Locus ID:
BniB02g075730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 64412877 | 64425864 | - | BniB02g075730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 219,355.02 Da | 45.79 | 82.12 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 1563 | 1603 | 1.79437E-20 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 781 | 821 | 1.15E-18 | - |
| CDD | cd01989 | STK_N | 846 | 993 | 3.15177E-47 | - |
| CDD | cd01989 | STK_N | 29 | 175 | 3.70454E-48 | - |
| CDD | cd14066 | STKc_IRAK | 1681 | 1950 | 8.56467E-87 | - |
| Pfam | PF04564 | U-box domain | 1559 | 1622 | 3.1E-13 | IPR003613 |
| Pfam | PF04564 | U-box domain | 778 | 839 | 9.9E-13 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 1265 | 1508 | 6.4E-37 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 493 | 745 | 3.2E-37 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1679 | 1947 | 5.8E-29 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1678 | 1949 | 1.62E-48 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 763 | 841 | 8.83E-21 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1551 | 1623 | 2.3E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1245 | 1524 | 6.61E-61 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 25 | 152 | 8.37E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 473 | 750 | 4.45E-64 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 564 | 775 | 3.3E-44 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 776 | 843 | 3.3E-22 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 24 | 173 | 1.1E-6 | IPR014729 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 846 | 975 | 3.3E-6 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1756 | 1952 | 1.2E-41 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1543 | 1639 | 6.3E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 473 | 563 | 5.1E-23 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1243 | 1335 | 3.0E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1336 | 1542 | 5.1E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1675 | 1754 | 2.1E-7 | - |
| SMART | SM00504 | Ubox_2 | 780 | 842 | 9.6E-23 | IPR003613 |
| SMART | SM00220 | serkin_6 | 491 | 756 | 9.1E-24 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1675 | 1951 | 2.9E-11 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1263 | 1526 | 1.9E-23 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 1562 | 1624 | 3.5E-20 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 776 | 849 | 26.547712 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1675 | 1950 | 28.993793 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1263 | 1559 | 33.050251 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 491 | 756 | 32.527294 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1558 | 1631 | 30.510586 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 609 | 621 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1387 | 1399 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1269 | 1290 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1627 | 1647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1627 | 1654 | - | - |
| Coils | Coil | Coil | 357 | 468 | - | - |
| Coils | Coil | Coil | 1147 | 1237 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61550.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_009137072.2 | U-box domain-containing protein 52 [Brassica rapa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S2B237 | Genome assembly, chromosome: 8 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS22100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14128 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3106, gene_3242 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018189 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053450, BVRB_9g211010 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg15303, Sbi_jg38442, Sbi_jg38443, Sbi_jg38444 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg15366, Seu_jg15367, Seu_jg15368, Seu_jg26596 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00006461, GOSA_00006462, GOSA_00006463, GOSA_00020211 ... |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02210, Sgl07073, Sgl07108, Sgl07364 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012294, gene:ENSEOMG00000029173 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0003540, CQ.Regalona.r1.3AG0009060 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30187550, pistato.v30187590 |
| Apiaceae | Apium graveolens | 2 | Ag10G02693, Ag4G01789 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005170, COCNU_09G002320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717300, gene-LOC103721159 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3268.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G24353, Ftri6G25477 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT4G25160.1, AT5G51270.1, AT5G61550.2, AT5G61560.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10003692m.g.v1.0, Thhalv10005349m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g24750.v2.2, Sp2g24760.v2.2, Sp6g13460.v2.2 ... |
| Brassicaceae | Brassica nigra | 13 | BniB02g028540.2N, BniB02g028560.2N, BniB02g028630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1163 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1268 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0345s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2380 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00012348, Pov_00029734, Pov_00040770 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21169 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2901, AH06.181, BH01.3240, BH06.282, CH01.3474 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0116730, gene-QOZ80_2BG0170410 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0416400.1, HORVU.MOREX.r3.6HG0541590.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_008916, gene-QYE76_027777, gene-QYE76_030583 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G000100, Oco06G000140, Oco11G001980, Oco12G001900 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g01160.2, LOC_Os06g04880.1, LOC_Os10g41220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G285800, gene-BS78_10G030600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101057, Pt_Chr0101166, Pt_Chr0402257 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G027760, Chr09G004970, Chr0G015010, Chr11G023260 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G608600, Tel6E01G059900, Tel7E01G177600 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC4AG059360, gene_TRIDC4AG059380 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G382700.4, TraesCS4A02G382900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb312220_P004, Zm00001eb377470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34673, nbis-gene-40371 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g15688, Zma_g29079, Zma_g31326 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.1433, evm.TU.LG01.805, evm.TU.LG06.1890 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1246 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12437, nbisL1-mrna-12548 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18619 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12816 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.286 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008769 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-575 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8884 |
| Salicaceae | Populus euphratica | 1 | populus_peu08177 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631680 |
| Solanaceae | Solanum chilense | 2 | SOLCI006716300, SOLCI007312500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012512, gene-LOC107019988 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4201 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2145 |
| Zosteraceae | Zostera marina | 2 | Zosma01g31080.v3.1, Zosma05g30630.v3.1 |