Basic Information
Locus ID:
BniB02g074170.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 63720698 | 63721981 | + | BniB02g074170.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 48,190.82 Da | 48.12 | 102.30 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 2.83072E-23 | - |
| Pfam | PF04564 | U-box domain | 7 | 76 | 7.8E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 76 | 1.52E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 390 | 2.34E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 91 | 407 | 8.2E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 5.3E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 10 | 74 | 1.1E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 81 | 42.293056 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_013737091.1 | E3 ubiquitin-protein ligase PUB22-like [Brassica napus] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6AEY6 | RING-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRAA03T13989Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology