Basic Information
Locus ID:
BniB02g074030.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 63633171 | 63637482 | - | BniB02g074030.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 108,266.55 Da | 52.81 | 79.96 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01770 | UBX_UBXN2 | 358 | 419 | 4.76721E-30 | - |
| CDD | cd14349 | UBA_CF106 | 11 | 48 | 1.81802E-11 | IPR039517 |
| Pfam | PF00789 | UBX domain | 353 | 420 | 1.1E-16 | IPR001012 |
| Pfam | PF08059 | SEP domain | 244 | 317 | 9.9E-26 | IPR012989 |
| Pfam | PF14555 | UBA-like domain | 12 | 51 | 2.3E-13 | - |
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 532 | 944 | 7.3E-181 | IPR002554 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 233 | 324 | 3.4E-28 | IPR036241 |
| SUPERFAMILY | SSF48371 | ARM repeat | 545 | 926 | 2.01E-151 | IPR016024 |
| SUPERFAMILY | SSF46934 | UBA-like | 11 | 50 | 2.89E-7 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 312 | 419 | 6.98E-21 | IPR029071 |
| Gene3D | G3DSA:3.30.420.210 | SEP domain | 238 | 301 | 1.4E-25 | IPR036241 |
| Gene3D | G3DSA:1.25.10.10 | - | 539 | 943 | 5.1E-185 | IPR011989 |
| Gene3D | G3DSA:1.10.8.10 | - | 8 | 51 | 1.7E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 303 | 425 | 1.6E-30 | - |
| SMART | SM00166 | ubx_3 | 349 | 426 | 4.3E-5 | IPR001012 |
| SMART | SM00553 | faf_3 | 236 | 329 | 2.1E-49 | IPR012989 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 239 | 303 | 32.814999 | IPR012989 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 352 | 419 | 19.8375 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15415.1 | Protein phosphatase 2A regulatory B subunit family protein. B' regulatory subunit of PP2A (AtB'gamma) | 0 |
| RefSeq | XP_013595044.1 | PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Brassica oleracea var. oleracea] | 0 |
| Q8RW96 | Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana OX=3702 GN=B'GAMMA PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0N595 | serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like OS=Raphanus sativus OX=3726 GN=LOC108850175 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology