Basic Information
Locus ID:
BniB02g072790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein folding in endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 63109772 | 63110873 | + | BniB02g072790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 39,000.11 Da | 65.26 | 83.58 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 54 | 3.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 91 | 5.49E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 48 | 4.4E-8 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 1.2E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 53 | 12.279382 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22430.1 | F-box family protein. | 0 |
| RefSeq | XP_006286208.2 | putative F-box/kelch-repeat protein At4g22430 [Capsella rubella] | 0 |
| Q1PE57 | Putative F-box/kelch-repeat protein At4g22430 OS=Arabidopsis thaliana OX=3702 GN=At4g22430 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8S1ZYD5 | Genome assembly, chromosome: 3 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS8517 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |